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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB10G17210.1 | ||||||||
Common Name | LOC102710731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 89aa MW: 9914.24 Da PI: 8.5214 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.8 | 1.5e-06 | 13 | 56 | 14 | 54 |
HHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54 d+i + +++L++llP +s +a+++ a L++++ YI+sL OB10G17210.1 13 DEITELISKLQSLLPDSSrrrGATGRPSPAAKLLKETCSYIQSL 56 67999***********888*888888899*************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-7 | 13 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-7 | 13 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSGRRASGRI TDDEITELIS KLQSLLPDSS RRRGATGRPS PAAKLLKETC SYIQSLHREV 60 DDLSERLSEL MATMDSNSPQ ADIIRTLLR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837942 | 1e-105 | CT837942.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015N03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006661756.1 | 2e-57 | PREDICTED: transcription factor ILI3-like | ||||
Swissprot | A2XD15 | 2e-31 | ILI3_ORYSI; Transcription factor ILI3 | ||||
Swissprot | Q10R47 | 2e-31 | ILI3_ORYSJ; Transcription factor ILI3 | ||||
TrEMBL | J3N2H3 | 2e-57 | J3N2H3_ORYBR; Uncharacterized protein | ||||
STRING | OB10G17210.1 | 6e-57 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 3e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102710731 |